ECCB 2010 NEXT-GEN SEQUENCING TUTORIAL PDF

Visualizing the next generation of sequencing data with GenomeView .. .. A .. Why inverse proteins are relatively abundant, J.-C. Nebel and C. Walawage, Protein & Peptide Letters, 17(7), Michal Nánási ([email protected] ) Website: (free download, tutorials, manual, . Next generation sequencing presents new challenges in large scale data at the European Conference of Computational Biology (ECCB) , Ghent. Tutorials, workshops and seminars To do bioinformatics well, you need to learn 3 things. ECCB Next-gen sequencing Tutorial (Thomas [email protected]).

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We are grateful to the ECCB steering committee for their support and contribution to the organization of the conference.

He will start an assistant-professorship at the University of Leuven in October. The added focus on reproducibility resulted in many authors opting to make their methods open source.

Current methods and applications for regulatory sequence analysis Tutorial next-fen This distinction was intended to create more clarity for both the reviewers and authors; the reviewing criteria were therefore explicitly stated in the submission guidelines.

Each tutorial will offer participants an opportunity to learn about new areas of bioinformatics research, to get an introduction to important established topics, or to develop advanced skills in areas they are already familiar with.

On the scientific side, the Proceedings Track presents novel scientific contributions, while the Highlights Track showcases already published high-impact science in computational biology. The conference topics span all areas of methodological developments for computational biology and innovative applications of computational methods to molecular biology and seqquencing. In recent years, there has been a revolution in the area of DNA sequencing with the arrival of next-generation sequencing technologies.

These technologies have resulted in a huge reduction in the cost of sequencing and has meant that many new researchers now have sequencng to raw sequencing data. The Application Track is an initiative to promote application of computational biology in industry and other fields beyond academia. We received more than eighty applications for travel fellowships from young scientists with an oral or poster presentation.

It is worth noting that many authors expressed their gratitude to the reviewers for their comments and suggestions.

Next generation sequencing | Taverna

His current work includes downstream analysis of next-generation sequencing data in order to identify putative SNPs and indels. Ruben Kok Dutch Techcentre for Life Sciences had a decisive role in the Local Steering Committee, while Celia van Gelder is thanked once more for her support also in organisational matters. We believe that for all of the rejected submissions, the reviewers provided high-quality reports.

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All poster abstracts are available on the conference web site. The annotation of the non-coding genome with gene regulatory function is lagging far behind the annotation of protein-coding genes and improved annotation will depend both on deeper biological insight into cis-regulatory logic and on more efficient computational prediction algorithms.

It coordinates, integrates and sustains bioinformatics resources across its member states, enabling users in academia and industry to access vital data, tools, standards, compute and training services for research.

Learning resources | BacPathGenomics

nexh-gen We thank all theme co-chairs for their availability throughout the reviewing process, for their very positive attitude in the final selection and for their valuable help nezt-gen re-examining the modified submissions.

Friday, 01 April The origins of problems are discussed as well as their importance for follow up studies. The review form explicitly differentiated between impact and suitability for ECCB on the one hand, and scientific quality and reproducibility on the other. Finally, the ELIXIR track proved to be a very popular addition, with 50 high-quality submissions for only 12 presentation slots. The 48 accepted papers are included in this special issue.

Details of the conference are available 20110 the conference web site www. In this short course, we will introduce the participants to the different next-generation sequencing technologies, show how to do some basic quality checking of the data, how to run the various next-generation alignment tools, create de novo sequence assemblies, and call variants such as SNPs, short indels, and structural variants from a reference sequence.

After the reviewers reached a consensus, a final ranking and selection for each theme was carried out tutprial the theme co- chairs. Today’s software and CPU time availability on clusters, super computers, and the grid allow for easy improvement of old files. In recent years, there has sdquencing a revolution in the area of DNA sequencing with the arrival of next-generation sequencing technologies.

This tutorial will help people who are getting started on next-gen sequencing get an idea of the tools, flows, and procedures that they may need to set up to handle this data. The type and volume of the data produced by next-generation sequencing machines presents many previously unseen informatics challenges. Consequently, submissions relating to pure research were deemed out of scope.

Jan Aerts received his PhD at Wageningen University Netherlands in on the subject of chicken genome mapping and sequencing.

In the light of these developments, this tutorial will focus on bioinformatics methods to predict cis-regulatory elements and to aid the nfxt-gen of regulatory annotation. New challenges are now emerging in these fields with the recent advances in low-cost ultra-fast sequencing, bio-imaging and big data. It is therefore important for all protein structure bioinformaticians to be able to evaluate the quality of the structures used in their studies and to know when it might be beneficial to ask an NMR spectroscopist or X-ray crystallographer to help bring an old file up to today’s standards.

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The ECCB organizing committee congratulates all these dynamic young scientists for their enthusiasm, which is essential to the ttutorial of research in computational biology.

Linking sequence patterns and functionality of alpha-helical antimicrobial peptides. BioinformaticsVolume 32, Issue 17, 1 SeptemberPages i—i, https: Following the call for Proceedings papers, we received submissions.

A dedicated Education Poster 2100 was created to devote in-depth attention to education that is so crucial for the next generation of bioinformaticians.

It offers participants an opportunity to learn about new areas of bioinformatics research, to get an introduction to important established topics, or to develop advanced skills in areas about which they are already familiar.

Many people contributed to the local organization of the conference, often much beyond the call of duty, and we owe them a great debt, in particular Femke Francissen and Jacintha van Beemen, both at tuotrial Dutch Techcentre for Life Sciences DTL for their relentless logistic and organizational support.

The ECCB conferences are gathering about a thousand scientists and industry staff working at the intersection of a broad range of disciplines including computer science, mathematics, biology and medicine.

Next generation sequencing

After thorough consideration and discussion, the ECCB theme co- chairs selected 24 proposals out of 71 submissions, mainly on the criteria of compatibility with the ECCB objectives, wide impact in the life sciences and the potential for attracting a large audience to the conference.

Working with next-generation sequencing data Tutorial 2: Sponsored Talks enable sponsors to showcase their innovations in computational biology and to highlight their scientific value. We also thank, as our further supporting sponsors, Gemeentemuseum Den Haag, where also the opening reception will be held, the Municipality of The Hague, Bayer sponsoring the morning run and The Utrecht Bioinformatics Centre sponsoring the Poster Award. Recent advances in homology modelling and drug design have made clear that the quality of protein structures is really imnportant for good results.

Submissions to the Poster Track were evaluated based on a word abstract and will be shown at the conference along the five main conference themes.

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